Package: acmgscaler 1.0.0
acmgscaler: An R package for variant effect calibration to ACMG/AMP evidence levels
Provides tools to calibrate functional variant scores to ACMG/AMP evidence strength levels for clinical variant interpretation.
Authors:
acmgscaler_1.0.0.tar.gz
acmgscaler_1.0.0.zip(r-4.7-any)acmgscaler_1.0.0.zip(r-4.6-any)acmgscaler_1.0.0.zip(r-4.5-any)
acmgscaler_1.0.0.tgz(r-4.6-any)acmgscaler_1.0.0.tgz(r-4.5-any)
acmgscaler_1.0.0.tar.gz(r-4.7-any)acmgscaler_1.0.0.tar.gz(r-4.6-any)
acmgscaler_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
acmgscaler/json (API)
| # Install 'acmgscaler' in R: |
| install.packages('acmgscaler', repos = c('https://badonyi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/badonyi/acmgscaler/issues
Datasets:
- variant_data - Example variant data
acmg-guidelinesbioinformaticsgoogle-colab
Last updated from:641d35f4a3. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 110 | ||
| source / vignettes | OK | 151 | ||
| linux-release | NOTE | 97 | ||
| macos-release | NOTE | 139 | ||
| macos-oldrel | NOTE | 162 | ||
| windows-devel | NOTE | 49 | ||
| windows-release | NOTE | 55 | ||
| windows-oldrel | NOTE | 66 | ||
| wasm-release | OK | 79 |
Exports:calibrate
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calibrate variant effect scores to ACMG/AMP evidence strength | calibrate |
| Example variant data | variant_data |
